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To override the properties for a broker archive:

In the Application Perspective view of the Toolkit, right click on a project and select New, Other ..., General, File.  Then select a project and select a file name (e.g. service.properties).

For each override, enter the old value followed by an equals sign then the new value, for example:

OLDDSN=NEWDSN

Then issue the following command:

mqsiapplybaroverride -b "<path for bar file>" -p "<path for override file>"

The bar file can then be transferred to the server using ftp (if necessary) and then deployed using a command such as:

mqsideploy -i localhost -p 1414 (or MQ queue manager port) -e <execution group> -b <broker> -a <bar file> -w 1200